extraindo lista de arquivos fasta

extraindo lista de arquivos fasta

grep '>' Pvulgaris.Lnc.out-1438107679-HighConfidencelncRNA.fa | sed 's/>//' |

Comentários

Postar um comentário

Postagens mais visitadas deste blog

Instalar o VMPlayer no Linux Ubuntu

Quando fui instalar o VMPlayer no Linux encontrei o seguinte erro: Extracting VMware Installer...done. Installing VMware Player Application 15.5.0 Copying files... Configuring... bora/lib/string/str.c:284 Buffer too small VMware Workstation Error: VMware Workstation unrecoverable error: (host-9802) bora/lib/string/str.c:284 Buffer too small You can request support.  To collect data to submit to VMware support, choose "Collect Support Data" from the Help menu. You can also run the "vm-support" script in the Workstation folder directly. We will respond on the basis of your support entitlement. A solução foi: sudo LC_ALL=C ./VMware-Player-15.5.0-14665864.x86_64.bundle
Leia mais

MitoBim results

Hi there, I've been using mitobim1.8 to reconstruct mitochondrial genomes from a bird using a related species. It seems to have worked; however I don't quite understand the output. In my last iteration file, there are a number of padded and unpadded fasta files... named, for example: sample-reference-out- AllStrains.padded.fasta sample-reference-out- AllStrains.unpadded.fasta sample-reference-out-sample. padded.fasta sample-reference-out-sample. unpadded.fasta sample-reference-out- reference.padded.fasta sample-reference-out- reference.unpadded.fasta I understand the difference between the unpadded and padded, but not AllStrains vs sample vs reference. Could you please explain this to me? I think I've worked out that the AllStrains is being used as the backbone for the next iteration. However this confuses me, as it also appears that in the info folder from mira, in the assembly.txt file all the tags relate to the sample version. Also, I was wondering if you have ...
Leia mais
 https://phylogeneticgeek.wordpress.com/2011/09/16/how-to-run-paup-in-mac-os-x-tiger-under-classic-environment/   How to run PAUP in Mac OS X Tiger (under classic environment) September 16, 2011             1 Vote PAUP * 4.0 (Phylogenetic Analysis Using Parsimony (and Other Methods)) is a popular phylogenetic software.  If you’re in this field of work, you’ve likely have used it or have at least heard of it before.  If you want to use PAUP and you have an Intel Mac, you’ll have to resort to the command line version of the program.  This is because the GUI (Graphical User Interface) version of PAUP only runs in older Macs with PPC processors (i.e. G3, G4, G5). The nice thing about GUI version of PAUP is you can print your trees as a PICT file and you can import it into Word and other Adobe programs to edit it and polish it for a publication.  In the GUI version, it is much eas...
Leia mais