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Mostrando postagens de setembro, 2022

Executar o mrbayes em paralelo

 mpirun -np 6 /usr/local/bin/mb se o programa não estiver instalado em ambiente conda, não se esqueça de sair dele antes de tentar rodar ;)

Usando o STRUCTURE

 structure_threader run -i Ugibba_filtered1_ref.vcf -o ./results2 -als ~/anaconda3/envs/structure/bin/alstructure_wrapper.R -K 15 -t 3 --ind Ugibba.indfile Fonte: https://radcamp.github.io/Lisbon2020/05_POPULATION_STRUCTURE.html Sendo que o arquivo ind: The “indfile” Open the file with your favorite text editor. If you don’t have one and want to stay on the CLI, you can try the command  nano ~/str_analyses/oyster.indfile  in a new terminal window. The first few lines of this file should look like this: BC1_10_C6 Victoria_BC 4 BC1_20_C6 Victoria_BC 4 BC1_22_C7 Victoria_BC 4 BC1_4_C3 Victoria_BC 4 BC1_7_C5 Victoria_BC 4 BC1_8_C4 Victoria_BC 4 BC1_9_C5 Victoria_BC 4 BC2_10_C5 Klaskino_BC 1