srsilva Notas

sudo R CMD INSTALL [nomedoprograma]

srsilva@ubuntu:/data/sequencing/raw$ more getSRA.sh #!/bin/sh # Sugerido em http://www.ncbi.nlm.nih.gov/books/NBK47527/ # -l (maximum bandwidth of request, try 200M and go up from there) - Megabits/second # -i <private key file> (http://pt.wikipedia.org/wiki/Criptografia_de_chave_p%C3%BAblica) # -r recursive copy # -Q (for adaptive flow control) - needed for disk throttling! (ajustar o fluxo de dados ao gravar no disco) # -T to disable encryption # -k1 enable resume of failed transfers ascp -i ~/.aspera/connect/etc/asperaweb_id_dsa.putty -k1 -QTr -l200m anonftp@ftp-private.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByStudy/sra/SRP/SRP021/SRP021491/ .

perl -lane 'print $_ if ($.%4==2);' [nome do arquivo.fastq] | wc -l